Simulation of Base Excision Repair in the Calculus of Covalent Bonding

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dc.cclicenceCC-BY-NCen
dc.contributor.authorKuhn, Stefanen
dc.date.acceptance2018-05-29en
dc.date.accessioned2018-07-17T10:46:50Z
dc.date.available2018-07-17T10:46:50Z
dc.date.issued2018
dc.description.abstractIn previous papers we have introduced a new process calculus inspired by chemical reactions, called the Calculus of Covalent Bonding. The key feature of the calculus was a new prefix operator of the form (s; b), where doing of action b triggers undoing of one of the actions in s. Because of this connection between doing and undoing of actions (or forming and breaking of bonds in a chemical modelling) we called this local reversibility. We have shown that our calculus enables out-ofcausal order reversibility. In this paper we demonstrate the Base Excision Repair of DNA, a high-level biological example, using our calculus. We also introduce a software which allows us to check the syntax of processes and to simulate their execution.en
dc.funderN/Aen
dc.identifier.citationKuhn, S. (2018) Simulation of Base Excision Repair in the Calculus of Covalent Bonding. In: Ulidowski, I. and Kari, J. (eds.) Reversible Computation 10th International Conference (RC 2018) proceedings, Leicester, UK, September 2018.en
dc.identifier.doihttps://doi.org/10.1007/978-3-319-99498-7_8
dc.identifier.isbn9783319994987
dc.identifier.isbn9783319994970
dc.identifier.urihttp://hdl.handle.net/2086/16364
dc.language.isoenen
dc.peerreviewedYesen
dc.projectidN/Aen
dc.publisherSpringeren
dc.researchinstituteCyber Technology Institute (CTI)en
dc.subjectProcess calculien
dc.subjectReversibilityen
dc.subjectBase Excision Repairen
dc.subjectCalculus of Covalent Bondingen
dc.titleSimulation of Base Excision Repair in the Calculus of Covalent Bondingen
dc.typeConferenceen

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